Genetic Experimentation ~ Bibliography

Genetic Experimentation: The Adaptive Function of Sex & ConjugationAbbot, P. et. al. (2011). “Inclusive fitness theory and eusociality.” Nature 471 (March 24, 2011).

Achtman, M. (1975). “Mating aggregates in Escherichia coli conjugation.” J.Bacteriol. 123:505–515.

Alcock, J. (1993). Animal Behavior (5th ed.). Sinauer Associates

Armbruster, W.S. (1996). “Exaptation, Adaptation, and Homplasy: Evolution of Ecological Traits in Dalechampia Vines”, pp. 227-243, in Homoplasy: The Recurrence of Similarity in Evolution. (eds. Sanderson, M.J. and Hufford, L.). Academic Press

Arms, K., and Camp, P. (1987). Biology (3rd ed.). Holt, Rinehart and Winston

Baldwin, B.G. (1997). “Adaptive Radiation of the Hawaiian Silversword Alliance: Convergence and Conflict of Phylogenetic Evidence from Molecular and Non- molecular Investigations”, pp. 103-128, in Molecular Evolution and Adaptive Radiation (eds. Givnish, T.J. and Sytsma, K.J.). Cambridge U. Press

Barnes, R.E. (1980). Invertebrate Zoology (4th ed). Saunders College/Holt, Rinehart and Winston

Beaudet, A.L. and Jiang, Y. (2002). “A Rheostat Model for a Rapid and Reversible Form of Imprinting-Dependent Evolution”. Am. J. of Human Genetics 70:1389-1397

Belas, R. (1997). “Proteus Mirabilis and Other Swarming Bacteria”, pp. 183-219, in Bacteria as Multicellular Organisms (eds. Shapiro and Dworkin). Oxford U. Press

Bell, G. (1982). The Masterpiece of Nature. Croom Helm.

Bennett, N.C., Faulkes, C.G., and Jarvis, J. (1999). “Socially Induced Infertility, Incest Avoidance and the Monopoly of Reproduction in Cooperatively Breeding African Mole-Rats, Family Bathyergidae”, Advances in the Study of Behavior 28:75-114

Bonner, J.T. (1971). Cells and Societies. Princeton U. Press

Bourke, A. and Franks, N. (1995). Social Evolution in Ants. Princeton U. Press

Bristow, A. (1978). The Sex Life of Plants. Holt, Rinehart and Winston

Brooker, R.J., Widmaier, E.P., Graham, L.E., Stiling, P.D. (2011). Biology (2nd ed.). McGraw Hill

Bush, G. (1982). “What do we really know about speciation?”, pp. 119-128, in Perspectives on Evolution (ed. Milkman, R.). Sinauer Associates

Butlin, R.K., Schon, I., Griffiths, H.I. (1998). “Introduction to Reproductive Modes”, pp. 1-24, in Sex and Parthenogenesis: Evolutionary Ecology of Reproductive Modes in Non-Marine Ostracods (ed. Martens, K.). Backhuys Publishers, Leiden

Campbell, B. (1987). Humankind Emerging (5th ed.). Scott, Foresman and Company

Campbell, J. (1994). “Organisms Create Evolution”, pp. 85-102, in Creative Evolution? (eds. Campbell, J. and Schoft, J.W.).

Campbell, J. (1982). “Autonomy in Evolution”, pp. 190-201, in Perspectives on Evolution (ed. Milkman, R.). Sinauer Associates

Capy, P., Claude B., Higuet, D., Langin, T. (1998). Dynamics and Evolution of Transposable Elements. International Thomson Publishing Services.

Carlson, E.A. (2011). Mutation: The History of an Idea from Darwin to Genomics. Cold Spring Harbor Laboratory Press

Carlson, E.A. (1966). The Gene: A Critical History. W.B. Saunders Co.

Chase, M.W. and Palmer, J.D. (1997). “Leapfrog Radiation in Floral and Vegetative Traits Among Twig Epiphytes in the Orchid Subtribe Oncidiinae”, pp. 331-352, in Molecular Evolution and Adaptive Radiation (eds. Givnish, T.J. and Sytsma, K.J.). Cambridge U. Press

Clewell, D.B. (1985). “Sex Pheromones, Plasmids and Conjugation in Streptococcus Faecalis”, pp. 13-28, in The Origin and Evolution of Sex MBL Lecture Series in Biology, Vol. 7 (eds. Halvorson and Monroy). A.R. Liss.

Clewell, D. and Flanagan, S. (1993). “The Conjugative Transposons of Gram-Positive Bacteria”, pp. 369-393, in Bacterial Conjugation. (ed. Clewell, D.). Springer

Darwin, C. (2011). The Variation of Plants and Animals Under Domestication. Ulan Press

Darwin, C. (1952a). The Origin of Species by Means of Natural Selection (Great Books Series). Encyclopedia Britannica

Darwin, C. (1952b). The Descent of Man (Great Books Series). Encyclopedia Britannica

Dawkins, R. (1989). The Selfish Gene (2nd ed.). Oxford U. Press

Dawkins, R. (1986). The Blind Watchmaker. Longmans

Dennett, D. (1995). Darwin’s Dangerous Idea. Simon and Schuster.

Denton, M. (1998). “Beyond the Reach of Chance”, pp. 47-61, in Philosophy of Biology (ed. Ruse, M.). Prometheus Books

Dobzhansky, (1951). Genetics and Origins of Species. (3rd ed). Columbia U. Press

Elliott, C.G. (1993). Reproduction in Fungi. Springer

Eldridge, N. (1999). The Pattern of Evolution. W.H. Freeman & Co.Evans, H.E. and West-Eberhard, M.J. (1970). The Wasps. University of Michigan Press

Foster, S.A., Johnson, K.P., Tlusty, M.U. and Willmott, H.E. (1997). “Homoplasy: The Recurrence of Similarity in Evolution”, pp. 245-69, in in Molecular Evolution and Adaptive Radiation (eds. Givnish, T.J. and Sytsma, K.J.). Cambridge U. Press

Freeman, S. (2011). Biological Science (4th ed). Pearson Benjamin Cummings

Futuyma, D. (1986). Evolutionary Biology (2nd ed.). Sinauer Associates

Gadagkar, R. (1997). Survival Strategies: Cooperation and Conflict in Animal Societies. Harvard U. Press

Gamboa, G.J. (1996), “Kin Recognition in Social Wasps,” pp. 161-177, in Natural History and Evolution of Paper-Wasps, (eds. Turillazzi, S. and West-Eberhard, M.J.). Oxford U. Press

Gardner, E., Simmons, M., Snustad, D. (1991). Principles of Genetics (8th ed.). John Wiley and Sons

Givnish, T.J. (1997). “Adaptive Radiation and Molecular Systematics: Issues and Approaches”, pp. 1-54, in Molecular Evolution and Adaptive Radiation. (eds. Givnish, T.J. and Sytsma, K.J.). Cambridge U. Press

Gould, S.J. (1989). Wonderful Life: The Burgess Shale and the Nature of History. W.W. Norton & Co.

Gould, S.J. (1982). “The Meaning of Punctuated Equilibrium and Its Role in Validating a Hierarchical Approach to Macroevolution” in Perspectives on Evolution (ed. Milkman, R.). Sinauer Associates.

Gould, S.J. (1980) The Panda’s Thumb (1982 paperback ed.). W.W. Norton and Co. Gould, S.J. (1977a). Ontogeny and Phylogeny. Belknap

Gould, S.J. (1977b). Ever Since Darwin. W.W. Norton & Co.

Herb, B.R., Wolschin, F., Hansen, K.D., Aryee, M.J., Langmead, B., Irizarry, R., Amdam, G., and Feinberg, A.P. (2012). “Reversible switching between epigenetic states in honeybee behavioral subcastes.” Nature Neuroscience 16:1371-373

Herbers, J. (1993). “Ecological determinants of queen number in ants”, pp. 262-93, in Queen Number and Sociality in Insects (ed. Keller). Oxford U. Press

Higgins, N.P. (1992). “Death and Transfiguration Among Bacteria”, pp. 207-211, Trends in Biochemical Science June 1992.

Hilliker, A.J. and Sharp, C.B. (1987). “New Perspectives on the Genetics and Molecular Biology of Constitutive Heterochromatin”, pp. 91-113, in Chromosome Structure and Function: Impact of New Concepts (eds. Gustafson, J.P. and Appels, R.). Springer

Holland, P.W.H. and Garcia-Fernandez, J. (1996). “Hox genes and chordate evolution”, Developmental Biology 173:382-95

Holldobler, B. and Wilson, E.O. (1990). Ants. Harvard U. Press

Huxley, J. (1942). Evolution: The Modern Synthesis. G. Allen and Unwin Ltd. Jablonka, E. and

Lamb, M.J. (1995). Epigenetic Inheritance and Evolution: The Lamarckian Dimension. Oxford U. Press

Jablonka, E. and Lamb, M.J. (2006). Evolution in Four Dimensions. MIT Press

Jackman, T., Losos, J.B., Larson, A. and de Queiroz, K. (1997). “Phylogenetic Studies of Convergent Adaptive Radiation in Caribbean Anolis Lizards”, pp. 535-57, in Molecular Evolution and Adaptive Radiation. (eds. Givnish, T.J. and Sytsma, K.J.). Cambridge U. Press

Jones, A.R. (1974). The Ciliates. Palgrave Macmillan

Kuhn, T.S. (1970). The Structure of Scientific Revolutions (2nd ed.). University of Chicago Press

Laybourn-Parry, J. (1984). A Functional Biology of Free-Living Protozoa. Croom Helm

Lenski, R.E. and Mittler, J.E. (1993). “The Directed Mutation Controversy and Neo-Darwinism”. Science 259: 188-194

Li, W-H, (1997). Molecular Evolution. Sinauer and Associate

McClintock, B. (1987a). “Modified Gene Expressions Induced by Transposable Elements”, pp. 617-25, in The Collected Papers of Barbara McClintock. Garland Publishing

McClintock, B. (1987b). “The Significance of Responses of the Genome to Challenge”, pp. 626-35, in The Collected Papers of Barbara McClintock. Garland Publishing

McDonald, J. F. (1995). “Transposable elements—possible catalysts of organismic evolution.” Trends Ecol. Evol. 10:123–126.

McEachern, L.A. and Lloyd, V. (2011). “The Epigenetics of Genomic Imprinting”, pp. 43-69, in Epigenetics: Linking Genotype and Phenotype in Development and Evolution. (eds. Hallgrimsson, B. and Hall, B.K.) U. California Press

Maguire, M.P. (1987). “Meiotic behavior of a tiny fragment chromosome that carries a transposed centromere.” Genome 29:744-747.

Matsuda (1987). Animal Evolution in Changing Environments (with Special Reference to Abnormal Metamorphosis). Wiley Press

Maynard Smith, J. (1989). Evolutionary Genetics Oxford U. Press

Maynard Smith, J. (1978). The Evolution of Sex. Cambridge U. Press

Maynard Smith, J. and Szathmary, E. (1995). The Major Transitions in Evolution. Oxford U. Press

Mayr, E. (1982). The Growth of Biological Thought. Harvard U. Press

Mech, L. (1995). The Wolf: The Ecology and Behavior of an Endangered Species. U. of Minnesota Press

Michod, R.E., Bernstein, H., Nedelcu, A.M. (2008). “Adaptive Value of Sex in Microbial Pathogens”, Infect. Genet. Evol. 8(3):267-285

Miyake, A. (1996). “Fertilization and Sexuality in Ciliates”, pp. 243-290, in Ciliates: Cells as Organisms. (eds. Hausmann and Bradbury). Vch Pub

Mock, D., Drummond, H. and Stinson, C. (2010). “Avian siblicide”, in Exploring Animal Behavior: Readings from American Scientist. Sinauer Associates

Moritz, R., and Southwick, E. (1992). Bees as Superorganisms: An Evolutionary Reality, Springer-Verlag

Muller, G., and Wagner, G. (1996). “Homology, Hox genes, and Developmental Integration”, Amer. Zool. 36:4-13

Neyfakh, L. (2011). Boston Globe, April 17, 2011 http://www.boston.com/bostonglobe/ideas/articles/2011/04/17/where_does_good_co me_from/?page=1

Nicolas, R.B. (1987). “Chromosomes and Kinetechores Do More in Mitosis Than Previously Thought”, pp. 53-74, in Chromosome Structure and Function: Important New Concepts (eds. Gustafson, J.P. and Appels, R.). Springer

Nowak, M.A., Tarnita, C.E. and Wilson, E.O. (2010). “The Evolution of Euociality.” Nature 466: 1057-1062

Otto S.P. (2007). “The evolutionary consequences of polyploidy”. Cell 131 (3): 452–62

Peters, J.E. and Benson, S.A. (1994). Redundant Transfer of F’ Plasmids Occurs between Escherichia coli Cells during Nonlethal Selections”. Journal of Bacteriology 177, No. 3: 847-850.

Pinker, S. (2002). The Blank Slate: The Modern Denial of Human Nature. Viking. Radicella, J.P.,

Park, P.U. and Fox, M.S. (1995). “Adaptive Mutation in Escherichia coli: A Role for Conjugation.” Science 268:418-423

Raff, R.A. and Kaufman, T.C. (1983). Embryos, Genes and Evolution: The Developmental-Genetic Basis of Evolution. Indiana U. Press

Raper, J.R. (1966). The Genetics of Sexuality in Higher Fungi. The Ronald Press Co.

Ricci, N. (1982), “Preconjugant Cell Interactions in Oxytricha bifaria (Ciliata, Hypotrichida): A Two-Step Recognition Process Leading to Cell Fusion and the Induction of Meiosis,” pp. 319-350, in Sexual Interactions in Eukaryotic Microbes. (eds. O’Day,
D.H. and Horgen, P.). Academic Press

Ridley, Matt (1993). The Red Queen: Sex and the Evolution of Human Nature. Macmillan

Rieseberg, L.H. and Willis, J.H. (2007). “Plant speciation”. Science 317 (5840): 910–4

Robinson, G.E. (2010). “From Society to Genes with the Honey Bee.” pp. 327-33, in Exploring Animal Behavior: Readings from American Scientist. (eds. Sherman, P.W. and Alcock, J.). Sinauer and Associates, Inc

Ruhfel, R.E., Leonard, B.A.B., Dunny, G.M. (1997). “Pheromone-Inducible Conjugation in Enterococcus faecalis: Mating Interactions Mediated by Chemical Signals and Direct Contact”, pp. 53-68, in Bacteria as Multicellular Organisms (eds. Shapiro and Dworkin). Oxford U. Press

Sanderson, M.J. (1991). “In Search of Homoplastic Tendencies: Statistical Inference of Topological Patterns in Homoplasy.” Evolution 45(2):351-358

Shapiro, J.A. (1997). “Multicellularity: The Rule, Not the Exception: Lessons from Escherichia coli colonies”, pp. 14 to 52, in Bacteria as Multicellular Organisms (eds. Shapiro and Dworkin). Oxford U. Press

Shapiro, J.A. (1995). “Adaptive Mutation: Who’s Really in the Garden”. Science 268: 373-74.

Shapiro, J.A. and Higgins, N.P. (1989). “Differential Activity of a Transposable Element in E.coli Colonies”, J. Bacteriology 171:5975-5986

Shee, C., Gibson, J.L. and Rosenberg, S.M. (2012). “Two Mechanisms Produce Mutation Hotspots at DNA Breaks in Escherichia coli”, Cell Reports 2(4):714-21.

Simpson, George G. (1951). The Meaning of Evolution. New American Library

South, G.R. and Whittick, A. (1987). Introduction to Phycology. Blackwell.

Stebbins, G.L. (1992). “Modal Themes: A New Framework for Evolutionary Syntheses”, in Perspectives on Evolution (ed. Milkman, R.). Sinauer Associates

Steele, E.J. (1979). Somatic Selection and Adaptive Evolution: On the Inheritance of Acquired Characteristics. U. of Chicago Press

Taylor, E.B., McPhail, J.D., and Schluter, D. (1997). “History of Ecological Selection in Sticklebacks: Uniting Experimental and Phylogenetic Approaches”, in Molecular Evolution and Adaptive Radiation (eds. Givnish, T.J. and Sytsma, K.J.). Cambridge U. Press

Templeton, A. (1987). “Inferences on Natural Population Structure from Genetic Studies on Captive Mammalian Populations” in Mammalian Dispersal Patterns: The Effects of Social Structure on Population Genetics (eds. Chepko-Sade, B.d., and Halpin, Z.J.). U. of Chicago Press

Trivers, R. (1971). “The Evolution of Reciprocal Altruism”, The Quarterly Review of Biology 46:35-57.

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Wake, D. (1996). “Introduction”, pp. xvii – xxv, in Homoplasy: The Recurrence of Similarity in Evolution (eds. Sanderson, M.J. and Hufford, L.). Academic Press

West-Eberhard, M.J. (1988). “Phenotypic plasticity and ‘genetic’ theories of insect sociality” in Evolution of Social Behavior and Integrative Levels (eds. Greenberg and Tobach), pp. 123-33. Lawrence Erlbaum

West-Eberhard, M.J. (1987). “Flexible strategy and social evolution” in Animal Societies: Theories and Facts (eds. Brown and Kikkawa). Japan Scientific Societies Press

Willetts, N. (1993). “Bacterial Conjugation: A Historical Perspective”, pp. 1-22, in Bacterial Conjugation (ed. Clewell, D.). Springer

Williams, G.C. (1980). “Kin Selection and the Paradox of Sociality” in Sociobiology: Beyond Nature/Nurture. Westview

Williams, G.C. (1975). Sex and Evolution. Princeton U. Press

Williams, G.C. (1965). Adaptation and Natural Selection. Princeton U. Press

Wilson, D.S. and Sober, E. (1994). “Re-introducing Group Selection to the Human Behavioral Sciences”. Behavioral and Brain Sciences 17:585-654.

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Wilson, E.O. (1971). The Insect Societies. Harvard U. Press